Index

_

__init__() (medpy.core.logger.Logger method) (medpy.filter.IntensityRangeStandardization.IntensityRangeStandardization method) (medpy.graphcut.graph.GCGraph method) (medpy.graphcut.graph.Graph method) (medpy.graphcut.maxflow.GraphDouble method) (medpy.graphcut.maxflow.GraphFloat method) (medpy.graphcut.maxflow.GraphInt method) (medpy.io.header.Header method) (medpy.iterators.patchwise.CentredPatchIterator method) (medpy.iterators.patchwise.CentredPatchIteratorOverlapping method) (medpy.iterators.patchwise.SlidingWindowIterator method)

A

anisotropic_diffusion() (in module medpy.filter.smoothing) append() (in module medpy.features.utilities) ArgumentError

asd() (in module medpy.metric.binary) assd() (in module medpy.metric.binary) average_filter() (in module medpy.filter.image)

B

boundary_difference_division() (in module medpy.graphcut.energy_voxel) boundary_difference_exponential() (in module medpy.graphcut.energy_voxel) boundary_difference_linear() (in module medpy.graphcut.energy_voxel) boundary_difference_of_means() (in module medpy.graphcut.energy_label) boundary_difference_power() (in module medpy.graphcut.energy_voxel) boundary_maximum_division() (in module medpy.graphcut.energy_voxel)

boundary_maximum_exponential() (in module medpy.graphcut.energy_voxel) boundary_maximum_linear() (in module medpy.graphcut.energy_voxel) boundary_maximum_power() (in module medpy.graphcut.energy_voxel) boundary_stawiaski() (in module medpy.graphcut.energy_label) boundary_stawiaski_directed() (in module medpy.graphcut.energy_label) bounding_box() (in module medpy.filter.binary)

C

centerdistance() (in module medpy.features.intensity) centerdistance_xdminus1() (in module medpy.features.intensity) CentredPatchIterator (class in medpy.iterators.patchwise) CentredPatchIteratorOverlapping (class in medpy.iterators.patchwise) chebyshev() (in module medpy.metric.histogram) chebyshev_neg() (in module medpy.metric.histogram)

chi_square() (in module medpy.metric.histogram) correlate() (in module medpy.metric.histogram) correlate_1() (in module medpy.metric.histogram) cosine() (in module medpy.metric.histogram) cosine_1() (in module medpy.metric.histogram) cosine_2() (in module medpy.metric.histogram) cosine_alt() (in module medpy.metric.histogram)

D

dc() (in module medpy.metric.binary)

DependencyError

E

euclidean() (in module medpy.metric.histogram)

F

fidelity_based() (in module medpy.metric.histogram) fit_labels_to_mask() (in module medpy.filter.label)

FunctionError fuzzy_histogram() (in module medpy.features.histogram)

G

gauss_xminus1d() (in module medpy.filter.smoothing) gaussian_gradient_magnitude() (in module medpy.features.intensity) gaussian_membership() (in module medpy.features.histogram) GCGraph (class in medpy.graphcut.graph) ght() (in module medpy.filter.houghtransform) ght_alternative() (in module medpy.filter.houghtransform) Graph (class in medpy.graphcut.graph) graph_from_labels() (in module medpy.graphcut.generate)

graph_from_voxels() (in module medpy.graphcut.generate) graph_to_dimacs() (in module medpy.graphcut.write) graphcut_split() (in module medpy.graphcut.wrapper) graphcut_stawiaski() (in module medpy.graphcut.wrapper) graphcut_subprocesses() (in module medpy.graphcut.wrapper) GraphDouble (class in medpy.graphcut.maxflow) GraphFloat (class in medpy.graphcut.maxflow) GraphInt (class in medpy.graphcut.maxflow)

H

hd() (in module medpy.metric.binary) Header (class in medpy.io.header)

hemispheric_difference() (in module medpy.features.intensity) histogram_intersection() (in module medpy.metric.histogram) histogram_intersection_1() (in module medpy.metric.histogram)

I

ImageLoadingError ImageSavingError ImageTypeError immerkaer() (in module medpy.filter.noise)

immerkaer_local() (in module medpy.filter.noise) indices() (in module medpy.features.intensity) intensities() (in module medpy.features.intensity) IntensityRangeStandardization (class in medpy.filter.IntensityRangeStandardization) intersection() (in module medpy.filter.utilities)

J

jc() (in module medpy.metric.binary)

jensen_shannon() (in module medpy.metric.histogram) join() (in module medpy.features.utilities)

K

kullback_leibler() (in module medpy.metric.histogram)

L

largest_connected_component() (in module medpy.filter.binary) load() (in module medpy.io.load) local_histogram() (in module medpy.features.intensity)

local_mean_gauss() (in module medpy.features.intensity) local_minima() (in module medpy.filter.image) Logger (class in medpy.core.logger)

M

manhattan() (in module medpy.metric.histogram) mask_distance() (in module medpy.features.intensity) median() (in module medpy.features.intensity) medpy.core module medpy.core.exceptions module medpy.core.logger module medpy.features module medpy.features.histogram module medpy.features.intensity module medpy.features.utilities module medpy.filter module medpy.filter.binary module medpy.filter.houghtransform module medpy.filter.image module medpy.filter.IntensityRangeStandardization module medpy.filter.label module medpy.filter.noise module medpy.filter.smoothing module medpy.filter.utilities module medpy.graphcut module medpy.graphcut.energy_label module medpy.graphcut.energy_voxel module medpy.graphcut.generate module medpy.graphcut.graph module medpy.graphcut.maxflow module medpy.graphcut.wrapper module medpy.graphcut.write module medpy.io module medpy.io.header module medpy.io.load module medpy.io.save module medpy.iterators module

medpy.iterators.patchwise module medpy.metric module medpy.metric.binary module medpy.metric.histogram module medpy.metric.image module medpy.neighbours module medpy.neighbours.knn module medpy.utilities module medpy.utilities.argparseu module MetaDataError minowski() (in module medpy.metric.histogram) mkneighbors_graph() (in module medpy.neighbours.knn) module medpy.core medpy.core.exceptions medpy.core.logger medpy.features medpy.features.histogram medpy.features.intensity medpy.features.utilities medpy.filter medpy.filter.binary medpy.filter.houghtransform medpy.filter.image medpy.filter.IntensityRangeStandardization medpy.filter.label medpy.filter.noise medpy.filter.smoothing medpy.filter.utilities medpy.graphcut medpy.graphcut.energy_label medpy.graphcut.energy_voxel medpy.graphcut.generate medpy.graphcut.graph medpy.graphcut.maxflow medpy.graphcut.wrapper medpy.graphcut.write medpy.io medpy.io.header medpy.io.load medpy.io.save medpy.iterators medpy.iterators.patchwise medpy.metric medpy.metric.binary medpy.metric.histogram medpy.metric.image medpy.neighbours medpy.neighbours.knn medpy.utilities medpy.utilities.argparseu mutual_information() (in module medpy.metric.image)

N

noelle_1() (in module medpy.metric.histogram) noelle_2() (in module medpy.metric.histogram) noelle_3() (in module medpy.metric.histogram)

noelle_4() (in module medpy.metric.histogram) noelle_5() (in module medpy.metric.histogram) normalize() (in module medpy.features.utilities) normalize_with_model() (in module medpy.features.utilities)

O

obj_asd() (in module medpy.metric.binary) obj_assd() (in module medpy.metric.binary)

obj_fpr() (in module medpy.metric.binary) obj_tpr() (in module medpy.metric.binary) otsu() (in module medpy.filter.image)

P

pad() (in module medpy.filter.utilities) pdist() (in module medpy.neighbours.knn)

positive_predictive_value() (in module medpy.metric.binary) precision() (in module medpy.metric.binary)

Q

quadratic_forms() (in module medpy.metric.histogram)

R

ravd() (in module medpy.metric.binary) recall() (in module medpy.metric.binary) regional_atlas() (in module medpy.graphcut.energy_label) regional_probability_map() (in module medpy.graphcut.energy_voxel) relabel() (in module medpy.filter.label)

relabel_map() (in module medpy.filter.label) relabel_non_zero() (in module medpy.filter.label) relative_bin_deviation() (in module medpy.metric.histogram) relative_deviation() (in module medpy.metric.histogram) resample() (in module medpy.filter.image)

S

save() (in module medpy.io.save) sensitivity() (in module medpy.metric.binary) separable_convolution() (in module medpy.filter.noise) sequenceOfFloats() (in module medpy.utilities.argparseu) sequenceOfFloatsGe() (in module medpy.utilities.argparseu) sequenceOfFloatsGt() (in module medpy.utilities.argparseu) sequenceOfFloatsLe() (in module medpy.utilities.argparseu) sequenceOfFloatsLt() (in module medpy.utilities.argparseu) sequenceOfIntegers() (in module medpy.utilities.argparseu) sequenceOfIntegersGe() (in module medpy.utilities.argparseu) sequenceOfIntegersGeAscendingStrict() (in module medpy.utilities.argparseu) sequenceOfIntegersGt() (in module medpy.utilities.argparseu)

sequenceOfIntegersLe() (in module medpy.utilities.argparseu) sequenceOfIntegersLt() (in module medpy.utilities.argparseu) shifted_mean_gauss() (in module medpy.features.intensity) sigmoidal_difference_membership() (in module medpy.features.histogram) size_threshold() (in module medpy.filter.binary) SlidingWindowIterator (class in medpy.iterators.patchwise) sls() (in module medpy.filter.image) specificity() (in module medpy.metric.binary) split_marker() (in module medpy.graphcut.wrapper) ssd() (in module medpy.filter.image) SubprocessError sum_filter() (in module medpy.filter.image)

T

template_ellipsoid() (in module medpy.filter.houghtransform) template_sphere() (in module medpy.filter.houghtransform) trapezoid_membership() (in module medpy.features.histogram)

triangular_membership() (in module medpy.features.histogram) true_negative_rate() (in module medpy.metric.binary) true_positive_rate() (in module medpy.metric.binary)

V

volume_change_correlation() (in module medpy.metric.binary)

volume_correlation() (in module medpy.metric.binary)

X

xminus1d() (in module medpy.filter.utilities)